Influenza Virus Mashup

Influenza Virus Mashup

Archive for May, 2010

Via La RazónHubo vacunación masiva contra el virus de Gripe A.[Massive vaccination campaign against H1N1] Excerpt, with my translation:

El Ministerio de Salud de la Nación cumplió ayer, en diferentes espacios públicos de la Ciudad, una jornada de vacunación contra la Gripe A para inmunizar al 80% de la población en riesgo. 

The National Ministry of Health yesterday completed, in various public spaces in the city, a campaign of vaccination against H1N1 intended to immunize up to 80% of the at-risk population.

La cartera sanitaria dispuso carpas en el Zoológico, Costanera Sur y El Rosedal, entre otros sitios, por las que pasaron casi dos mil personas para vacunarse y recibir información. La campaña fue suspendida el sábado debido a la lluvia, pero fue implementada ayer hasta las 17. 

The health agency set up sites in the Zoo, Costanera Sur and El Rosedal, among other locations, to vaccinate almost 2,000 persons and to distribute information. The campaign was suspended on Saturday because of the rain, but was carried out yesterday until 5:00 p.m.

Los centros de vacunación también fueron dispuestos, a nivel nacional, en plazas, shoppings, supermercados y las principales calles para atraer a los habitantes. Los casos de riesgo son el personal de la salud, las embarazadas, las madres de bebés menores de seis meses, los niños de entre seis meses y cuatro años. También se vacunó a mayores de 64 años.

Vaccination centres were also set up on the national level, in plazas, shopping centres, supermarkets, and the principal streets where they could attract residents. At-risk persons include healthcare workers, mothers of babies under 6 months, and children between 6 month and 4 years old. Persons over age 64 were also vaccinated.

[Avian Flu Diary] WHO To Review Pandemic Status Tomorrow

Posted by Automator On May - 31 - 2010

(Mon, 31 May 2010 13:47:00 +0000)

 

 

# 4511

 

 

On June 1st the World Health Organization will convene a special teleconference with their influenza advisory committee to decide on the current status of the pandemic.   We should have some word later in the day as to what they decide.

 

Here is the Reuters report.

 

Experts to review status of flu pandemic on Tuesday

GENEVA

Mon May 31, 2010 2:23pm BST

GENEVA (Reuters) - An expert panel that advises the World Health Organization on pandemics will meet Tuesday to decide whether to declare the H1N1 flu outbreak over.

 

The WHO said in a statement Monday that its emergency committee will begin a teleconference at 1200 GMT Tuesday and results will be posted later in the day on its website.

 

Earlier this month, a WHO spokesman said the committee would consider three main options.

 

These would be to conclude that the pandemic was still in force and retain the WHO’s current phase 6 on its 6-level pandemic scale; state that pandemic had moved into a transitional “post-peak” phase; or declare that the pandemic was over.

 

(Continue . . . )

Via People’s Daily Online: Experts find compound to fight bird, seasonal flu. Excerpt:

Finding new flu drugs is essential as flu viruses mutate and are adept at evading the limited array of antiviral drugs. 

In a paper published in Nature Biotechnology, scientists from Hong Kong and Canada said they had found a chemical “nucleozin”, which fought off both seasonal flu viruses and the H5N1 in mice as well as in cell culture. 

“We have now brand-new weapons to combat influenza virus resistant to … (antiviral drugs like) oseltamivir and zanamivir,” said microbiologist Richard Yao at the University of Hong Kong, who led the study. 

Nearly all of the seasonal H1N1 viruses circulating in the United States in the 2008-2009 flu season were resistant to Roche AG (ROG.VX) and Gilead Sciences Inc’s (GILD.O) Tamiflu, known generically as oseltamivir, according to the paper. 

Adamantanes, an older class of drugs, was also powerless against seasonal H3N2 flu viruses in the United States during that same period. 

Zanamivir is the generic name for Relenza, GlaxoSmithKline (GSK.L) and Biota Inc’s (BTA.AX) flu drug Nucleozin targetted a protein in flu viruses, called nucleoprotein, that was responsible for virus replication, Yao said in reply to questions from Reuters. 

Yao said they selected nucleozin from a chemical library with more than 50,000 compounds, the same library which experts here used to study the SARS virus. 

“Nucleozin is highly potent in cell culture and also in mice infected with the highly pathogenic influenza virus H5N1 … (it can) stop the virus from replicating,” Yao said. 

The compound was effective against H1N1, H3N2, and H5N1 viruses and researchers can now target nucleoprotein to fight flu, Yao said.

[Avian Flu Diary] When Oil and Water Do Mix

Posted by Automator On May - 31 - 2010

(Mon, 31 May 2010 12:09:00 +0000)

 

 

# 4610

 

 

I’ve seen a good deal of speculation in recent days about the impact that the oil spill in the Gulf of Mexico may have on Hurricane season (and vice versa), and so I thought I’d post this two page guide produced by NOAA on the likely effects.

 

It seems highly unlikely to most experts that the oil spill will affect hurricane development this year.  

 

Less certain are the effects that gulf storms will have on the oil spill itself.  

 

They may help mix and `weather’ the oil, increasing the rate of biodegradation. But the winds (and surge tide) could also spread the oil further inland, particularly into the marsh and swamplands, complicating cleanup.

 

My thanks and a hat tip to FEMA Director Craig Fugate for tweeting this information on Twitter. Follow Craig at CraigatFEMA and of course, FEMAinfocus  for the latest disaster updates.

 

 

image

(click to open)

[Avian Flu Diary] A Host Of Reservoirs

Posted by Automator On May - 31 - 2010

(Mon, 31 May 2010 11:28:00 +0000)

 

 

# 4609

 

 

Today, another entry in the ever increasing list of animals that can serve as hosts for the influenza A virus.   This time it happens to be a variety of striped skunk (Mephitis mephitis), 8 of which died on a mink farm in Canada last December and January.

 

Initial necropsy and testing results indicated a mixed bacterial pneumonia (Streptococcus dysgaslactiae subsp. equisimilis, Staphylococcus aureus, and Hafnia alvei)  as the cause of death, but further testing revealed the pneumonia to be secondary to a viral infection by pandemic H1N1 2009.

Further complicating matters, the skunks also tested positive for ADV (Aleutian Disease Virus), a common virus carried by minks, that may have contributed to the severity of the skunk’s infections.

 

First some excerpts from the CDC EID Journal article (It’s relatively short, so follow the link to read the whole thing), then some commentary.

 

Volume 16, Number 6–June 2010
Letter

Pandemic (H1N1) 2009 in Skunks, Canada

Ann P. Britton,  Ken R. Sojonky, Andrea P. Scouras, and Julie J. Bidulka

<SNIP>

During mid-December 2009–mid-January 2010, eight striped skunks (Mephitis mephitis) died on a mink farm near Vancouver, British Columbia, Canada. On January 12, 2010, two of the skunks were brought to the Animal Health Centre in Abbotsford, British Columbia, for postmortem examination.

 

One skunk exhibited purulent nasal exudates. In both skunks, investigators observed splenomegaly and severe pneumonia, characterized by heavy, dark red to purple, lung lobes involving >70% of the lung field. Microscopic examination showed moderate rhinitis and severe bronchopneumonia with intralesional bacteria, areas of interstitial pneumonia, and occasional nematode larvae.

 

 

<SNIP>

Detection of influenza A virus nucleoprotein and matrix genes and hemagglutinin and neuraminidase typing was performed with real-time reverse transcription–PCR. Organ samples were positive for pandemic (H1N1) 2009, which was confirmed by sequence analysis of DNA fragments obtained in the hemagglutinin, neuraminidase, and matrix gene testing.

 

<SNIP>

 

In view of the detection of pandemic (H1N1) 2009 virus in 2 striped skunks with fatal pneumonia, this species should now be regarded as a potential source of influenza A virus.

 

Wild animals participate in the transmission of influenza A viruses between species, and the presence of wildlife on farms is known to be a risk factor for infection of poultry (7). Similar to raccoons, skunks express both α2,3 and α2,6 sialic acid receptors for avian and human influenza viruses in the respiratory tract (M. Shrenzel, San Diego Zoo, pers. comm.), which is believed to create the opportunity for mixed influenza infections with potential for genetic reassortment (8).

 

Skunks, like raccoons, are highly mobile animals with large home ranges in rural and urban areas, which provides numerous opportunities for influenza A virus exposure and transmission to poultry, livestock, pets, and, ultimately, humans. The inclusion of striped skunks in wildlife influenza surveillance programs may be warranted.

 

 

Influenza viruses must reside in a living host in order to replicate and survive.   Outside of a suitable host environment, the influenza virus can only survive for a limited amount of time.

 

In order to infect a host, a virus must attach itself to cells in the host’s body.  Influenza viruses have an affinity for either the alpha 2,3 receptor cell or the alpha 2,6 receptor cell.

 

Avian adapted influenza viruses bind preferentially to Alpha 2,3 receptor cells, which are commonly found in the digestive tract of birds.  This explains why most avian flu viruses are gastrointestinal infections in birds. 

 

Human adapted viruses have an affinity for the alpha 2,6 receptor cell, which populate the upper airway and lungs.  This is why influenza is a respiratory virus in humans.

 

 

There are some crossovers in receptor cells, and humans have some avian-like alpha 2,3 receptor cells, particularly deep in the lungs.  It is harder for avian influenzas to reach those cells, but not impossible.

 

Some species, like pigs, have an abundance of both types of receptor cells, and thus make good mixing vessels for human and avian adapted viruses.  

 

If a pig (or any other host) is simultaneously infected with two different flu viruses, it is possible for the viruses to swap genetic material (via reassortment) and create a new, hybrid virus.

 

Reassortant

 

For more on how influenza viruses are thought to bind to cells, you might wish to revisit:

 

Study: H1N1 Receptor Binding
RBD: Looking For The Sweet Spot
Receptor Binding Domains: Take Two

 

Last January I wrote a blog entitled Mixing Vessels For Influenza  which mentioned research done by two wildlife disease experts from the San Diego Zoo - Mark Schrenzel and Bruce Rideout – that identified the North American Striped Skunk - along with a handful of other small carnivores - as a potential host for influenza reassortment.

 

The striped skunk, like the pig, has both types of receptors cells.

 

Over the past few years we’ve seen reports of H5N1 (bird flu) infections  among dogs, cats, civets, raccoons, martens, and – of course – humans.   Additionally, researchers have successfully infected cattle with the H5N1 virus, along with ferrets and mice for testing.

 

Pandemic H1N1 flu has been documented in humans, swine, turkeys, skunks, ferrets, cats, and dogs.  For a listing of animal pandemic flu reports you can visit the AVMA Pandemic Flu page.

 

The fact that skunks, and civets, and raccoons are susceptible to influenza may seem inconsequential, but small mammals that can carry influenza viruses can become difficult biosecurity problems on poultry farms, and may serve as a conduit for bird flu viruses.  

 

Additionally, they provide yet another reservoir, and perhaps another opportunity for flu viruses to mutate or reassort.

 

While successful reassortments (biologically competitive and `fit’) don’t happen very often, when they do, they pose a significant threat to a variety of species, including humans. 

 

Reason enough to ramp up our surveillance in farmed animals and wildlife.

[Avian Flu Diary] Referral: Risk Communication and Disasters

Posted by Automator On May - 30 - 2010

(Sun, 30 May 2010 15:53:00 +0000)

 

# 4608

 

 

DemFromCt, writing on the Daily Kos, has a lengthy and important post on Risk Communications, and the way that has been playing out with the Deepwater Horizon Oil Spill. 

 

Included are extensive remarks by risk communications experts Peter Sandman and Jody Lanard.  This is a long (6000+ words) essay, but well worth taking the time to absorb.

 

Highly recommended.

 

 

Risk communication and disasters: just tell the truth

by DemFromCT

 

 

Dr. Peter Sandman is an internationally recognized expert on effective crisis communications, and he along with his wife and colleague  Dr. Jody Lanard produce a wealth of invaluable risk management advice on their website:

 

Peter Sandman Website logo

 

I’ve highlighted their work on numerous occasions, including:

Peter Sandman: Swine Flu For Grownups
Experts: `Mild’ Is A Misleading Term For This Pandemic
Peter Sandman On Pandemic Risk Communication

[Crof's H5N1] Back on the road

Posted by Automator On May - 30 - 2010

I’ve posted a few items this morning, but for the rest of the day I’ll be in a workshop and then driving home. In the meantime, consider this an open thread: What are your thoughts about H1N1, H5N1, and all the other infectious ills that flesh is heir to?

Via Myjoyonline.com: H1N1 hits Aburi Girls, over 80 students infected. Excerpt:

A massive wave of H1N1 influenza (swine flu) has hit another Eastern Region School, Aburi Presbyterian Senior High School, and over 80 students are believed to have been infected. 

This comes barely a week after over 170 students of the St. Martin’s Senior High School at Adoagyire in the same district got infected with the diseases. 

Reports say the over 80 infected students of the Aburi Presbyterian SHS have been quarantined in one of the dormitories in the school. 

One of the female students (name withheld), who spoke with our reporter, Kwaku Antwi-Otoo, alleged that the school authorities do not want their parents to know about the outbreak in the school. 

“We were in class on Monday, 24th May, 2010, when we saw the school vehicle, conveying some of the female students to the hospital. We enquired why and they told us they have been infected with the H1N1 flu. The school authorities are preventing our parents from knowing so as at now, am not sure our parents are aware of the outbreaks”, the student explained. 

The student explained that the school vehicle conveys 40 passengers and it did three trips, spawning suspicion that the figure could be more. 

“The students are in the school and they are being through it everyday. The teachers would use handkerchiefs to cover their mouths when teaching while the rest of the students would also use handkerchiefs to cover their mouth”, the student added. 

The student added that the teachers claim if the affected students mingled with the unaffected, the disease would spread. 

The Eastern Regional Director of the Ghana Health Services (GHS), Dr. Erasmus Adongo, confirmed the disease to Asempa News, but explained that the situation is under control.

[Avian Flu Diary] Flu: Down, But Not Completely Out

Posted by Automator On May - 30 - 2010

(Sun, 30 May 2010 12:51:00 +0000)

 

 

 

# 4607

 

 

The CDC released on Friday what they expect to be their last FluView report for the 2009-2010 flu season.  Influenza activity in the United States remains low.

 

While flu surveillance will continue throughout the summer, regular weekly reporting won’t resume until the fall.

 

A brief look at this last report, and a look around the globe at where pandemic H1N1 – and even low levels of seasonal H1 and H3 strains – are still circulating.

 

 

FluView:</p>
<p> A Weekly Influenza Surveillance Report Prepared by the Influenza </p>
<p>Division

2009-2010 Influenza Season Week 20 ending May 22, 2010
This is the final report of the 2009-2010 season.
The first weekly influenza surveillance report of the 2010-2011 season (week 40, week ending October 9, 2010) will be published on October 15, 2010.

All data are preliminary and may change as more reports are received.

Synopsis:

During week 20 ( May 16-22, 2010), influenza activity decreased in the U.S.

  • Two (0.2%) specimens tested by U.S. World Health Organization (WHO) and National Respiratory and Enteric Virus Surveillance System (NREVSS) collaborating laboratories and reported to CDC/Influenza Division were positive for influenza.
  • Both subtyped influenza A viruses were 2009 influenza A (H1N1).
  • The proportion of deaths attributed to pneumonia and influenza (P&I) was below the epidemic threshold.
  • Three influenza-associated pediatric deaths were reported and were associated with 2009 influenza A (H1N1) virus infection.
  • The proportion of outpatient visits for influenza-like illness (ILI) was 1.0%, which is below the national baseline of 2.3%. All 10 regions reported ILI below region-specific baseline levels.
  • No states reported widespread or regional influenza activity. One state reported local influenza activity. Guam, Puerto Rico, and 13 states reported sporadic influenza activity. The District of Columbia and 34 states reported no influenza activity, and the U.S. Virgin Islands and two states did not report.

INFLUENZA Virus Isolated

 

The CDC’s Key Flu Indicators page has their latest International summary, showing flu trends in selected regions of the world.  Some excerpts below, followed by a brief discussion.

 

image 

2009 H1N1 Flu: International Situation Update

May 28, 2010, 5:15 PM ET

This report provides an update to the international flu situation using data collected through May 23, 2010, and reported by the World Health Organization (WHO) on May 28.

The most active areas of 2009 H1N1 influenza transmission are in the tropical regions of the Caribbean and Southeast Asia. In the tropical regions of South America, 2009 H1N1 and seasonal influenza viruses continue to co-circulate at low levels. Influenza B has been reported at low but increasing levels in certain South American countries.  

Selected Highlights

  • • According to WHO, the majority of 2009 H1N1 virus isolates tested worldwide remains sensitive to oseltamivir, an antiviral medicine used to treat flu. Among 2009 H1N1 isolates tested worldwide, 290 have been found to be resistant to oseltamivir – 67 of these isolates were detected in the United States.
  • Approximately 1% of U.S. 2009 H1N1 viruses tested by CDC since September 1, 2009, have been resistant to oseltamivir.
  • Influenza B was reported as the predominating influenza virus accounting for 66.1% of all influenza detections in China (Hong Kong SAR), 84.4 % in the Republic of Korea and 85.1% in the Russian Federation.

  

  • Sporadic detections of seasonal influenza A(H1N1) virus were reported in China and the Russian Federation, and influenza A(H3N2) activity has been reported from China, Ghana, Kenya, and Thailand recently.

 

 

The World Health Organization’s most recent pandemic update (#102) describes the global situation this way:

 

The most active areas of pandemic influenza virus transmission currently are in parts of the Caribbean and Southeast Asia, where low level circulation is occurring. Except for localized areas of pandemic influenza activity in parts of Chile, there is little evidence of pandemic influenza activity in the temperate zone of the southern hemisphere.

 

Of note, Respiratory Syncitial Virus (RSV) is widely circulating in South America resulting in an increase in respiratory disease activity, complicating somewhat the interpretation of syndromic surveillance data from the area. RSV primarily affects children under the age of 5 years.

 

Seasonal influenza A viruses continue to be detected at low to sporadic levels in all regions. Influenza B has been reported in increasing but low numbers in South America, where it only recently appeared, while it is decreasing in Asia.

 

 

Of particular interest is the finding that seasonal influenza A viruses continue to be detected at low levels around the world.   These are the H3 and the H1 varieties.  

 

For months, there has been speculation that these strains might disappear completely, as has happened several times in the recent  past when a novel virus has emerged.   

A little pandemic history is in order.

 

Up until 1977, we only saw one influenza `A’ strain in circulation at a time.  And that was – up until that time – thought to be the normal scheme of things. 

 

Flu Timeline

 

As you can see in the chart above, in 1918 a pandemic of H1N1 supplanted whatever influenza `A’  (possibly H2N2) was circulating before that time, and for the next 40 years, it was believed to be the solitary `A’ strain in the wild.

 

In 1957, a new reassorted virus (H2N2) emerged with the Asian Flu, and even though it was a relatively mild pandemic, it very quickly replaced the H1N1 virus.

 

Again, just eleven years later, a new virus (H3N2) arrived in the form of the Hong Kong Flu, and the (now seasonal) H2N2 was no more.

 

Each time a new virus appeared, it drove out the competition.  Exactly why?  Well . . . we don’t really know why. 

 

But that was the pattern. 

 

Until 1977.  That year an old foe, in the form of the H1N1 virus, re-appeared after a 20 year absence.

 

How and why it returned is a mystery, although many believe it was the result of an accidental release from a Russian research laboratory.It was dubbed the `Russian Flu’, and quickly spread among the under-20-somethings who had no immunity.

 

But this time things were different. It didn’t replace or drive out the existing (H3N2) virus.

The reason most commonly given is that older people were less affected by the returning H1N1 virus – since those born before 1957 had previous exposure – and so they remained a reservoir of the H3N2 virus.

 

The two strains (H3N2 and H1N1) co-circulated, and for the past 33 years having two main `A’ strains in circulation (along with some `B’ viruses) has been the norm.

 

Once again, we are faced with the introduction of a new virus, the novel H1N1, and once again it has a predilection for those born after about 1957.

 

 

A bit surprisingly, the existing seasonal `A’ strains (H3N2/H1N1) all but disappeared from surveillance reports last fall despite there being an ample reservoir of 60+ year olds out there that are less affected by H1N1 and vulnerable to the older strains.

 

Now that pandemic flu activity has declined, surveillance has begun to pick up sporadic cases of the older seasonal H1N1 and H3N2 viruses again.   

 

The actual number detected remains small.

 

Whether this means that there remains a viable reservoir of these older influenza A strains, and we might see a resurgence of regular H1N1 or H3N2 next year, is too soon to answer.

 

This may simply be seasonal H3’s and H1’s `last gasp’, so to speak.

 

But as long as there are any of these seasonal viruses in circulation the potential for their return exists. 

 

And some scientists believe that as the number of susceptible hosts for a flu virus diminish, evolutionary pressures build upon the virus to mutate if it is to survive.  

 

Whether that theory holds true this time is, again, too soon to say. 

 

So, as this flu season comes to an end in the Northern Hemisphere, we are left with a bit of a cliffhanger. One filled with many unanswered questions and numerous possibilities for next fall. 

 

While we’ll be watching the tropics and the southern hemisphere for clues over the next few months, solid answers are likely to remain elusive until we actually see what happens next fall and winter.

 

Stay tuned.

[Crof's H5N1] Indonesia: 13-year-old may have H5N1

Posted by Automator On May - 30 - 2010

Ida at Bird Flu Information Corner doesn’t post often, but when she does, I pay attention. Here’s her latest, translated from Seputar IndonesiaKlaten, Central Java ::: Hospitals treats 13-year-old bird flu suspect. Excerpt:

A local suspected to contract bird flu or avian influenza infection by central public hospital, Soeradji Tirtonegoro in Klaten. 

Patient with initial AM (13-year-old), is a junior high school student resident of Dukuh Bometen, Desa Ngandong, Kecamatan Gantiwarni.  As showing bird flu-like symptoms, patient was referred by Gantiwarni public health center to Soeradji Tirtonegoro hospital. Patient was admitted to the hospital on Wednesday 26 May 2010, and placed in isolation unit. 

Director of Soeradji Tirtonegoro hospital, dr Bambang Purwoatmodjo stated bird flu suspect status as patient had direct contact with bird flu positive birds. 

“We don’t want to take any risk so we treat the patient in isolation unit,” said Tirtonegoro. 

Initial examination showed general flu symptoms with temperature reaching 40℃. Blood sample had been sent to Dipenogoro University laboratory and Ministry of Health, meanwhile patient had been treated with Tamiflu and infusion support, Tirtonegoro described.