Influenza Virus Mashup

Influenza Virus Mashup

Archive for March, 2010

Via the Booster Shots blog of The Los Angeles TimesResistance to swine flu antiviral drugs can develop faster than expected, research finds. Excerpt:

The pandemic H1N1 influenza virus can develop resistance to the commonly used antiviral drugs much faster than expected, federal researchers said Friday. 

Previous research had suggested that it would take 24 days or longer for resistance to the drugs to develop in a patient, but a new study reported in the journal Clinical Infectious Diseases found that resistance could appear in as little as nine days. 

The study also found that one patient developed resistance to the experimental intravenous drug peramavir, the first time clinically significant resistance to that drug has been observed. 

Dr. Matthew J. Memoli and Dr. Jeffrey K. Taubenberger of the National Institute of Allergy and Infectious Diseases reported on two immunocompromised patients who developed persistent swine flu infections. Both patients had undergone blood stem cell transplants several years earlier. The resistant form of the virus appeared in one patient after 14 days and in the second after nine days.

[Crof's H5N1] WHO: Update 93

Posted by Automator On March - 27 - 2010

WHO has published Pandemic (H1N1) 2009 - update 93. Excerpt:

As of 21 March 2010, worldwide more than 213 countries and overseas territories or communities have reported laboratory confirmed cases of pandemic influenza H1N1 2009, including over 16,931 deaths.

I would like to provide more from this update, but TypePad is behaving a little oddly today and won’t accept long excerpts.

[Avian Flu Diary] CDC FluView Week 11

Posted by Automator On March - 27 - 2010

(Fri, 26 Mar 2010 15:41:00 +0000)

 

 

# 4463

 

 

Midday on Friday is when we expect the CDC’s Key Flu Indicators and FluView Report, and today is no exception.

 

Influenza activity remains near the same levels as reported over the past several week; below normal.  

 

There are some signs of increasing activity in 3 of the 10 U.S. Regions (4,7, and 9), and there has been a slight uptick in the P&I mortality rate, but it still remains below the epidemic threshold for this time of year.

 

A few excerpts, then, from today’s FluView report.  Follow the link to read it in its entirety.

 

 

FluView:</p>
<p> A Weekly Influenza Surveillance Report Prepared by the Influenza </p>
<p>Division

2009-2010 Influenza Season Week 11 ending March 20, 2010

All data are preliminary and may change as more reports are received.

Synopsis:

During week 11 (March 14-20, 2010), influenza activity remained at approximately the same levels as last week in the U.S.

  • 139 (4.6%) specimens tested by U.S. World Health Organization (WHO) and National Respiratory and Enteric Virus Surveillance System (NREVSS) collaborating laboratories and reported to CDC/Influenza Division were positive for influenza.
  • Approximately 99% of all subtyped influenza A viruses reported to CDC were 2009 influenza A (H1N1) viruses.
  • The proportion of deaths attributed to pneumonia and influenza (P&I) was below the epidemic threshold.
  • One influenza-associated pediatric death was reported and was associated with an influenza A virus for which the subtype was undetermined.
  • The proportion of outpatient visits for influenza-like illness (ILI) was 1.8%, which is below the national baseline of 2.3%. Three of 10 regions (Regions 4, 7, and 9) reported ILI at or above region-specific baseline levels.
  • No states reported widespread influenza activity. Three states reported regional influenza activity. Puerto Rico and eight states reported local influenza activity. The District of Columbia, Guam and 31 states reported sporadic influenza activity. Eight states reported no influenza activity, and the U.S. Virgin Islands did not report.

U.S. Virologic Surveillance:

WHO and NREVSS collaborating laboratories located in all 50 states and Washington, D.C. report to CDC the number of respiratory specimens tested for influenza and the number positive by influenza type and subtype. The results of tests performed during the current week are summarized in the table below.

image

Pneumonia and Influenza (P&I) Mortality Surveillance

During week 11, 7.7% of all deaths reported through the 122-Cities Mortality Reporting System were due to P&I. This percentage was below the epidemic threshold of 7.8% for week 11.

Pneumonia And Influenza Mortality

 

Influenza-Associated Pediatric Mortality

One influenza-associated pediatric death was reported to CDC during week 11 (Mississippi) and was associated with an influenza A virus for which the subtype was undetermined. This death occurred during week 9 (the week ending March 6, 2010).

Influenza-Associated Pediatric Mortality

Geographic Spread of Influenza as Assessed by State and Territorial Epidemiologists:

The influenza activity reported by state and territorial epidemiologists indicates geographic spread of both seasonal influenza and 2009 influenza A (H1N1) viruses and does not measure the severity of influenza activity.

image

[Avian Flu Diary] Study: Efficacy of Facemasks Vs. Respirators

Posted by Automator On March - 27 - 2010

(Fri, 26 Mar 2010 12:30:00 +0000)

 

 

# 4462

 

 

For decades the assumption by just about everyone – from OSHA to the CDC, to medical professionals – has been that surgical facemasks did little to protect the wearer.   Surgical masks were designed to contain the wearer’s germs and protect those around them, not the other way around.

If you wanted to protect yourself against respiratory viruses, you needed to wear a properly fitted N-95 (or better) respirator.

 

image image

N-95 Respirator               Surgical Facemask

 

Using an N-95 respirator is problematic on a number of fronts, however. 

 

  • They are uncomfortable to wear for long periods of time. 
  • They saturate with exhaled moisture relatively quickly, and must be changed out every couple of hours. 
  • The must be fit tested for each wearer
  • The are 10 times more expensive than surgical masks.  
  • And our national supply of N-95s is totally inadequate to supply Health Care Workers during a prolonged pandemic wave.

Despite these limitations, many HCWs (Health Care Workers) have demanded that they be afforded the extra protection of N95 respirators when dealing with pandemic flu cases.

 

Indeed, the CDC’s  pandemic infection control guidelines  (updated March 10th) continue to recommend:

For the purposes of this document, close contact is defined as working within 6 feet of the patient or entering into a small enclosed airspace shared with the patient (e.g., average patient room):

 

Respiratory Protection –

Recommendation: CDC continues to recommend the use of respiratory protection that is at least as protective as a fit-tested disposable N95 respirator for healthcare personnel who are in close contact with patients with suspected or confirmed 2009 H1N1 influenza. This recommendation applies uniquely to the special circumstances of the current 2009 H1N1 pandemic during the fall and winter of 2009-2010 and CDC will continue to revisit its guidance as new information becomes available, within this season if necessary.

 

Masks and respirators, the CDC stresses, are the last line of defense in a health care facility.  And they make allowances for supply problems as well, saying that respirators may be prioritized for higher risk aerosol producing procedures.

 

The CDC’s stance, however, isn’t universally accepted or followed.  These are recommendations, after all, not mandates. 

 

Many hospitals have opted to use surgical masks as a matter of routine, except when performing aerosol producing procedures.  And this has caused no small amount of controversy in the healthcare profession.

 

The Respirator Controversy Continues
A Surgical Mask Strike
IOM Recommends N95s For HCWs

 

In a major turnaround, over the past few months we’ve seen a series of studies that suggest that surgical masks may be `non-inferior’ to N95 masks, or that they provide a similar level of protection as the more expensive respirator.

 

Most of these are observational studies, and as such, may be open to some criticism.   Health care workers do not work, and live, in a vacuum.  Controlling (or quantifying) the effects of non-patient (community) exposure to respiratory viruses becomes a real challenge.

 

Today we’ve another such study, that suggests that inexpensive facemasks may be more effective than previously thought in protecting against the H1N1 virus.

 

First the press release, then a link to the study.

 

 

Study finds surgical masks provided effective protection of health-care workers against H1N1

The effectiveness of ordinary surgical masks as opposed to respirators in protecting health care workers against the 2009 H1N1 influenza virus has been the subject of debate. An observational study published in the April 1, 2010 issue of Clinical Infectious Diseases, available online, suggests that surgical masks are just as effective as respirators in this regard.

 

Researchers analyzed the incidence of H1N1 among health care workers from April through August of 2009 at Tan Tock Seng Hospital in Singapore. A small percentage tested positive for H1N1 during this period. None had cared for any patients with H1N1 or worked in H1N1 screening areas of the emergency room. In all cases, transmission was believed to have occurred outside of patient care, when health care workers were in contact with roommates, the general public, and other sources.

 

From June 19 to July 21, health care workers at the hospital wore N95 respirators in the emergency room and an H1N1 isolation area. From July 22 to Aug. 31, surgical masks were used by workers in these areas. The incidence of H1N1 among workers remained low during both periods. Although the study was observational, the findings suggest that surgical masks and respirators did not differ in their effectiveness in preventing hospital staff from acquiring H1N1.

 

“What is more important than using high-filtration or respirator masks for known or suspected cases is to have a uniform policy, such as using surgical masks, when in close contact with all patients,” said study author Brenda Sze Peng Ang, MD, of the Tan Tock Seng Hospital in Singapore. “This way, health care workers are protected from getting infected by patients not initially thought to have H1N1.”

Here is the link to the journal article, with a few choice excerpts.  If you are in the Health Care field, you will probably want to read this in its entirety.

 

DOI: 10.1086/651159

BRIEF REPORT

Surgical Masks for Protection of Health Care Personnel against Pandemic Novel Swine‐Origin Influenza A (H1N1)–2009: Results from an Observational Study

Brenda Ang,Bee Fong Poh, Mar Kyaw Win, and Angela Chow

There is ongoing debate about the efficacy of surgical masks versus N95 respirators for protection against pandemic novel swine‐origin influenza A (H1N1)–2009. Our hospital, which is designated to manage outbreaks of emerging infection, has robust surveillance systems to detect infection in staff. The incidence of pandemic H1N1‐2009 remained low in staff with use of surgical masks.

 

<SNIP>

 

Discussion. Although this is an observational study, nonetheless our findings show that surgical masks and N95 respirators do not appear to differ in efficacy in the prevention of the acquisition of pH1N1 by staff. Our findings also highlight the importance of a robust HCW surveillance system for the detection of nosocomial transmission of pathogens, including novel pathogens.

 

<SNIP>

Conclusion. Our surveillance systems were effective in detecting infection among HCWs. None of the HCWs who cared for pH1N1 patients acquired infection from them. Those HCWs who did acquire pH1N1 appeared to have been infected from community exposure or in social settings with colleagues. The incidence of pH1N1 remained low in exposed staff, even when staff used surgical masks.

 

We are still some ways off from having a complete understanding of the relative efficacy of surgical masks vs. N95 respirators.

 

Definitive answers are notoriously hard to come by.

 

We were, in retrospect, very lucky that H1N1 proved to have a lower R0 (reproductive number) than originally feared.  That limited transmission. H1N1 also produced lower than expected mortality rates.

 

Again, a stroke of luck. 

 

Had this been a highly lethal H5 avian virus, or even a SARS-like virus, the clamor for the greater perceived protection afforded by N95 masks would have been overwhelming.

 

And our supply would have been exhausted in a matter of weeks.

 

So it would indeed be good news if surgical masks turn out to be equally protective against respiratory viruses as are fit-tested N95 respirators.  

 

They are cheaper, easier to wear, and in far more abundant supply.

 

But for that to be accepted by HCWs – particularly in the face of a dangerous pathogen – more convincing studies are going to be needed. Decades of practice and teaching are not easily swept aside. 

 

Hopefully we’ll get better answers to all this before the next pandemic arrives.

[Effect Measure] Immunity and the 1918 and 2009 pandemics

Posted by Automator On March - 27 - 2010

(Fri, 26 Mar 2010 06:17:21 -0500)

We continue to learn a great deal about influenza infection as researchers harvest information from the recent swine flu pandemic. The pork producers don’t like to call it “swine flu” but it may well be that its long sojourn in that animal since 1918 (did we give Spanish flu to pigs or did pigs give it us?) may hold an important clue to why older people suffered less than younger ones. It seemed fairly likely that the difference was related to immunity, but since H1N1 came back in 1977 after being absent since 1957, it wasn’t clear why younger people born after 1977 would be as immune as older ones born before 1957. Now two papers published in Science and Science Translational Medicine shed some light on this.

Read the rest of this post… | Read the comments on this post…

[Crof's H5N1] Australia: First H1N1 case of the season

Posted by Automator On March - 25 - 2010

Via The Mercury: Warning as swine flu hits Tasmania News. Excerpt:

Tasmania has recorded its first case of swine flu for the season prompting health warnings. Health officials are bracing for the second wave of the potentially deadly H1N1 virus which is due to strike in April and May. 

Tasmanians are being urged to ensure they are vaccinated against the flu strain and remain cautious about personal hygiene, which has slipped since the first outbreak of the disease almost a year ago. 

Last year, the World Health Organisation recorded nearly 15,000 deaths worldwide from the virus with seven Tasmanians dying because of complications with the flu. 

Of concern to Tasmanian health officials is that the first case for this season was not a result of travel but contracted from within the community. 

The Launceston woman in her 20s is not unwell but was showing signs of swine flu which was detected by her general practitioner. The GP reported the confirmed case to the Department of Health and Human Services. 

Deputy public health director Chrissie Pickin said the last notification of a swine flu infection was in January. 

“We are not sure this is the start of the season yet but we are expecting it to hit at some point and we are busy preparing for that,” Dr Pickin said. “Obviously as the winter season starts for Tasmanians we would hope that people continue to take the advice of health officials and practice good hygiene to avoid catching the flu. 

“Also, remember if you are sick stay away from school, keep kids home from school and if you are feeling unwell at all see your GP.” 

Dr Pickin said that after last year’s outbreak one in five Tasmanians had been vaccinated against the virus, which had cost taxpayers more than $1 million to roll out the free vaccination clinics.

[Crof's H5N1] US: A study of H1N1 in pregnant New York women

Posted by Automator On March - 25 - 2010

Via Morbidity and Mortality Weekly Report: 2009 Pandemic Influenza A (H1N1) in Pregnant Women Requiring Intensive Care — New York City, 2009. Excerpt:

An analysis of New York City 2009 H1N1 hospitalizations during May–June 2009 showed that pregnant women were 7.2 times more likely to be hospitalized and 4.3 times more likely to be admitted to an ICU than nonpregnant women (6). 

Immunologic changes, increased ventilatory demand, and decreased functional residual capacity and oncotic pressure all are postulated to predispose pregnant and postpartum women to severe respiratory complications from influenza virus infection (5,6). 

The case series in this report highlights some delays in pregnant women seeking care and obtaining appropriate diagnosis and treatment of 2009 H1N1 virus infection in New York City, despite extensive outreach to the public and health-care providers by public health officials. 

The illustrative cases highlight some factors contributing to the delays, including false-negative rapid diagnostic test results and not taking oseltamivir as prescribed. 

In addition, only one of the 17 women was reported to have received 2009 H1N1 vaccine. Although no vaccine is 100% effective, vaccination remains the most important and effective means of preventing influenza among pregnant women.

[Crof's H5N1] UK announces independent review of H1N1 response

Posted by Automator On March - 25 - 2010

Via WebMD.Boots.com: An independent review into the swine flu pandemic has been announced by the Government. Excerpt:

Following claims of an overreaction to the threat of the swine flu pandemic, the government is launching an independent review. 

The numbers of cases of swine flu - and deaths as a result of it - were far lower than experts had predicted, and the UK was left with millions of doses of unused antivirals and vaccines. 

The review 

The independent review will be chaired by former Welsh Chief Medical Officer Dame Deirdre Hine. 

Her brief is to review the response across England, Scotland, Wales and Northern Ireland. She’ll report to ministers before parliament breaks up for the summer. Dame Deirdre and her team will be able to interview key individuals involved. It is not clear yet whether any hearings will be held in public. 

The Department of Health says the review is being carried out as part of the normal procedures following a “major emergency event”. The findings will be used to help plan for future pandemics. 

Swine flu: Current situation 

People are still catching swine flu in the UK, although it is at the lowest level since H1N1 virus first appeared. 

The World Health Organisation estimates that there have been at least 16,813 deaths from swine flu around the world - 457 of them in the UK. 

Earlier this month, the outgoing Chief Medical Officer for England, Sir Liam Donaldson, predicted that the next pandemic will be far worse.

[Avian Flu Diary] Congratulations In Order

Posted by Automator On March - 25 - 2010

(Thu, 25 Mar 2010 14:24:00 +0000)

 

 

# 4461

 

 

 

It is always a pleasure to see excellence in blogging acknowledged, and so I’m happy to report that Professor Vincent Racaniello’s terrific Virology Blog has been selected by the Seed Media Group for an award for best clinical research blog.

 

Here’s a link to all of the Winners.   Congratulations to all of the nominees, and to the winners.

 

And here’s Vincent’s announcement on his blog.

 

 

Virology blog receives award at researchblogging.org

 

Those of us who follow Racaniello’s blog, and his TWiV and TWiP podcasts, know that this is a well deserved honor.

[Crof's H5N1] Mexico: 72,133 H1N1 cases and 1,128 deaths

Posted by Automator On March - 25 - 2010

The Mexican Health Secretariat has published its latest H1N1 update, dated March 22. To see the PDF, click on “ver mas” in the box dated 22 de Marzo 2010.

The update says Mexico has now recorded 72,133 cases, 1,128 of them fatal. Of those deaths, 103 have occurred since January 1—a sharp and continuing decline from the peak last fall, when 92 died in a single week.