Influenza Virus Mashup

Influenza Virus Mashup

Archive for January, 2010

Via The New York TimesDeaths From Pneumonia and Flu Spike Upward. Excerpt:

Deaths from pneumonia and influenza across the country rose sharply in the weekly flu report released Friday by the Centers for Disease Control and Prevention, but a spokesman for the agency called it merely “a blip we’re checking out.” 

It was premature to conclude that any third wave of swine flu was emerging, said the spokesman, Thomas Skinner. 

Underscoring his point, all the other data in the weekly C.D.C. report, along with New York City hospital admission records and visits to campus health centers tracked by the American College Health Association, found that flu activity was still declining across the country, so the rise in deaths was a mystery. 

The weekly report showed that 8.3 percent of all deaths in 122 cities were caused by pneumonia or flu, while the normal midwinter level is about 7.7 percent. That 8.3 percent was slightly higher than it was even in late November, when the flu’s fall wave peaked, although the normal level for late fall is about 6 percent.

[Crof's H5N1] Mexico: 69,949 cases and 986 deaths

Posted by Automator On January - 30 - 2010

The Mexican Secretariat of Health has done remarkable work, right from the outbreak of H1N1 last spring, in publishing regular updates. On Tuesday I posted a link to a January 25 report with a tally of 69,824 cases and 969 deaths. Now we have a new update just four days later, showing that since Monday Mexico has recorded 69,949 cases (125 more) and 986 deaths (17 more).

[Crof's H5N1] Ecuador: 103 deaths

Posted by Automator On January - 30 - 2010

Via MSN Latino: Confirman 103 fallecidos por la gripe A y 2.112 casos del virus en Ecuador. [Ecuador confirms 103 H1N1 deaths and 2,112 cases] Excerpt, with my translation:

Un total de 2.112 casos han resultado positivos de la gripe A en Ecuador, donde 103 personas han muerto por el virus, confirmó hoy el Ministerio de Salud. 

A total of 2,112 cases have tested positive for H1N1 in Ecuador, and 103 persons have died from the virus, the Ministry of Health confirmed today.

En total, de los 2.112 casos confirmados por laboratorio, la mayor cantidad se registra en la provincia de Pichincha (Andes), con 739, seguida por la de Guayas (costa), con 437 casos, según el reporte del Ministerio con corte al pasado 30 de diciembre, pero difundido hoy.

In total, of the 2,112 laboratory-confirmed cases, the majority were recorded in the province of Pichincha (Andes), with 739, followed by Guayas (on the coast), with 437, according to the Ministry reported dated December 30 but released today.

The story goes on to say that even the Galápagos Islands, some 1000 km offshore, had 19 cases and one death.

Recombinomics Commentary 17:45
January 27, 2010Doctors at Le Bonheur Children’s Medical Center are on high alert tonight after a spike in the number of children with flu-like symptoms. Right now, they believe all cases to be the novel H1N1 swine flu virus.

“Over the past 3 weeks or so, we’ve had about 17 or 18 admissions to Le Bonheur with confirmed influenza. I should say that we believe all or almost all of these will prove to be the novel H1N1 influenza virus.”

Infectious disease doctors believe its the only virus circulating in significant amounts in the community right now.

“I think 7 of the 17 or 18 have been admitted to the ICU. So that’s a bit of a shift of what we saw before.”

The above comments describe an increase in sever H1N1 cases in children in Tennessee. The Children’s Medical Center (see map) had seen high numbers of patients in the fall, which led to the use of tents to cover the overload. The current spike is well below earlier levels, but the frequency of cases admitted to the ICU is higher.

continued

http://www.recombinomics.com/News/01271004/H1N1_TN_ICU.html

Canada
• Canada donates 5 million doses of excess H1N1 vaccine to WHO redistribution effort (Link)

China
• Hong Kong to stockpile unwanted swine-flu vacccine (Link)

Egypt
• WHO announces 4 human H5N1 cases (Link)
• 2 new H1N1 deaths. Total now 253 (translated) (Link)

France
• Bulletin on H1N1 (2009) (translated) (Link)

India
Bird flu spreads to more areas in West Bengal (Link)

Indonesia
• The Intellectual Property Fight That Could Kill Millions (Link)

Israel
• Thousands of chickens killed after suspected avian flu outbreak (Link)
• 43,000 Pullets Destroyed Because of Avian Flu (Link)

Ukraine
• One in six patients examined in Poltava region diagnosed A/H1N1 influenza (Link)

United Kingdom
• Woman with swine flu dies in Northern Ireland (Link)

United States
• US: H1N1 Flu Hits Old Age Homes (Link)
• NM: Data analysis on NM swine flu cases released (Link)
• NV: Elderly Woman Dies From H1N1 Virus (Link)

Vietnam
• Schools in north report fresh swine-flu outbreaks (Link)
Bird flu heads south (Link)
• Vietnam wishes to bolster cooperation with WHO (Link)

General
• Influenza and H1N1 Bad for Your Heart (Link)
• H1N1 vaccination debate still a hot issue for parents, babysitters (Link)
• Stirling Products has high hopes for ImmunoXel clinical trial to treat flu (Link)
• WHO: Avian influenza - situation in Egypt – update 27 (Link)
• FDA Approves Beech Tree Labs’ Influenza IND Application (Link)

Commentary
• Recombinomics: D225G In First 2010 H1N1 Sequence (Link)
• Recombinomics: Fujian H5N1 In Israel? (Link)
• Recombinomics: H1N1 Fatality Rate in Memphis Children Raises Concerns (Link)
• Recombinomics: D225G/N In Fatal H1N1 in Chernihiv Ukraine (Link)

[Crof's H5N1] Canada: 426 H1N1 deaths

Posted by Automator On January - 29 - 2010

The Public Health Agency of Canada has published its Surveillance - H1N1 Flu Virus for this week. It reports one new H1N1 death, in Ontario, bringing the national total to 426.

[Crof's H5N1] CIDRAP’s H1N1 update

Posted by Automator On January - 29 - 2010

CIDRAP has published a new update of its Novel H1N1 Influenza (Swine Flu) overview—the best single resource I know on the subject.

[Crof's H5N1] CDC: Week 3 update

Posted by Automator On January - 29 - 2010

The CDC has published its 2009 H1N1 U.S. Situation Update for Week 3. It includes a total of 39,387 influenza-associated hospitalizations between August 30, 2009, and January 23, 2010. Deaths in the same period totalled 1,857.

[Avian Flu Diary] CDC: FluView 2010 Week 3

Posted by Automator On January - 29 - 2010

(Fri, 29 Jan 2010 17:54:00 +0000)

 

 

# 4306

 

 

The key indicators for influenza activity around the country remained roughly the same in the latest reporting period as they were in week 2

 

Once again the P&I (pneumonia & influenza) Mortality levels remain above the epidemic threshold for this time of year.   Not all  P&I deaths can be attributed to influenza, however.

 

Overall, US flu activity continues to be considerably below the levels we saw last October and well below normal for this time of year.

 

Below you’ll find some excerpts from the CDC’s weekly FluView  report. Follow the link to read it in its entirety.

 

 

2009-2010 Influenza Season Week 3 ending January 23, 2010

All data are preliminary and may change as more reports are received.

Synopsis:

During week 3 (January 17-23, 2010), influenza activity remained at approximately the same levels this week in the U.S.

  • 164 (4.6%) specimens tested by U.S. World Health Organization (WHO) and National Respiratory and Enteric Virus Surveillance System (NREVSS) collaborating laboratories and reported to CDC/Influenza Division were positive for influenza.
  • All subtyped influenza A viruses reported to CDC were 2009 influenza A (H1N1) viruses.
  • The proportion of deaths attributed to pneumonia and influenza (P&I) was above the epidemic threshold.
  • Five influenza-associated pediatric deaths were reported. Four deaths were associated with 2009 influenza A (H1N1) virus infection and one was associated with an influenza A virus for which the subtype was undetermined.
  • The proportion of outpatient visits for influenza-like illness (ILI) was 1.7% which is below the national baseline of 2.3%. Two of the 10 regions (Regions 4 and 9) reported ILI equal to their region-specific baseline.
  • No states reported widespread influenza activity, five states reported regional influenza activity, Puerto Rico and nine states reported local influenza activity, the District of Columbia, Guam, and 33 states reported sporadic influenza activity, and the U.S. Virgin Islands and three states reported no influenza activity.

U.S. Virologic Surveillance:

WHO and NREVSS collaborating laboratories located in all 50 states and Washington D.C., report to CDC the number of respiratory specimens tested for influenza and the number positive by influenza type and subtype. The results of tests performed during the current week are summarized in the table below.

image

Pneumonia and Influenza (P&I) Mortality Surveillance

During week 3, 8.3% of all deaths reported through the 122-Cities Mortality Reporting System were due to P&I. This percentage was above the epidemic threshold of 7.7% for week 3, and is the second consecutive week that the percentage of P&I deaths has been above the epidemic threshold.

Pneumonia And Influenza Mortality

Influenza-Associated Pediatric Mortality

Five influenza-associated pediatric deaths were reported to CDC during week 3 (New York [4] and Wisconsin). Four deaths were associated with 2009 influenza A (H1N1) virus infection and one was associated with an influenza A virus for which the subtype was undetermined. The deaths reported during week 3 occurred between November 8, 2009 and January 2, 2010.

Influenza-Associated Pediatric Mortality

[Crof's H5N1] WHO: Update 85

Posted by Automator On January - 29 - 2010

WHO has published Pandemic (H1N1) 2009 - update 85. Excerpt:

As of 24 January 2010, worldwide more than 209 countries and overseas territories or communities have reported laboratory confirmed cases of pandemic influenza H1N1 2009, including at least 14711 deaths. 

WHO is actively monitoring the progress of the pandemic through frequent consultations with the WHO Regional Offices and member states and through monitoring of multiple sources of information. 

Situation update: 

Although much of the temperate northern hemisphere passed a peak of fall and wintertime pandemic influenza activity between late October and late November 2009, virus transmission remain active in several later affected areas, particularly in North Africa, limited areas of eastern and southeastern Europe, and in parts of South and East Asia. 

In North Africa, limited data suggests that pandemic influenza virus transmission remains active and geographically widespread, particularly in Morocco, Algeria, Libyan Arab Jamahiriya, and in Egypt, although most countries in the region appeared to have recently passed a peak of activity during December 2009 or January 2010. 

In west Asia, pandemic influenza activity continues be geographically regional to widespread, however activity levels have continued to decline or remain low since December 2009. 

In South Asia, pandemic influenza activity remains active but geographically variable. Recent peaks in activity were noted during late December and early January 2010 in northern India, Nepal, and Sri Lanka. Influenza activity remained stable but elevated in western India, continued to decline substantially in northern India, and remained low overall in southern and eastern India. In Bangladesh, regional spread influenza activity and a low intensity of respiratory diseases activity was reported. 

In East Asia, transmission of pandemic influenza virus remains active, however, overall activity continued to decline in most countries. An increasing trend in respiratory diseases with localized spread was reported for DPR Korea. In the Republic of Korea, transmission of pandemic influenza virus remains active (>20% respiratory specimens tested positive for pandemic H1N1), however, overall activity continue to decline since peaking during November 2009. 

In Japan, influenza activity continues to decline, however high levels of transmission persist on the southern island of Okinawa. 

In northern and southern China, pandemic virus isolations have declined substantially since peaking early to mid November 2009, however, in recent weeks detections of influenza type B viruses have increased. 

In southeast Asia, transmission of pandemic influenza virus persists, but current activity levels are low. In Vietnam, influenza activity has declined substantially since peaking during October and November 2009. In Thailand, focal outbreaks of influenza were reported from a few provinces in northern and central parts of the country, however, overall ILI activity remains low. 

In Europe, transmission of pandemic influenza virus remains geographically regional to widespread in the central, eastern, and southeastern parts of the continent, however, overall activity continues to decline in most places. Several countries (Austria, Albania, Bulgaria, Slovakia, and the Russian Federation) reported slight increases in the levels of ARI or ILI activity, however in most, levels remain well below recent peaks in activity. The overall rate of respiratory specimens testing positive for influenza (16%) continued to fall since peaking (45%) during early November 2009. 

In the Americas, both in the tropical and northern temperate zones, overall pandemic influenza activity continued to decline or remain low in most places. Of note, detections of RSV have increased in a few countries in the Americas, which may partially account for elevated ILI activity in those areas, particularly among young children. 

In the US and Canada, pandemic influenza virus detections and the numbers of severe and fatal cases have decline substantially as rates of ILI have fallen below seasonal baselines. 

In Central America and Caribbean, pandemic influenza virus transmission persists but overall activity remains low or unchanged in most places.

[Crof's H5N1] US: 43 H1N1 deaths in Louisiana

Posted by Automator On January - 29 - 2010

Via TopNews: DHH: 2 more die of swine flu in Louisiana; state H1N1 toll 43. Excerpt:

As per the most recent swine flu-related information forwarded by Louisiana’s Department of Health and Hospitals (DHH), two more people have fallen prey to the H1N1 virus in the state during the last one week. 

While both the latest swine flu victims were women – one of them belonged to the Monroe area, and the other was from the Alexandria area. 

With the two recent deaths of swine flu patients, the total H1N1 death toll in Louisiana has risen to 43. In addition, as many as 237,000 people in the state either presently have H1N1 flu or have suffered from it in the past. 

Reporting the two recent swine flu deaths, the DHH officials also informed that the swine flu vaccine has been made widely available in the state. Earlier, ever since October, the availability of the vaccine was largely limited to people in the high-risk group alone. 

Furthermore, noting that over 346,951 doses of the swine flu vaccine have been administered, the DHH officials added that the transmission of the influenza has undergone a notable decrease over the past few weeks.